Ni 100 surface relaxation: Difference between revisions
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{{Sur_sci}} | {{Sur_sci - Tutorial}} | ||
== Task == | |||
Relaxation of the first two layers of a Ni (100) surface. | |||
== Input == | |||
=== {{TAG|POSCAR}} === | |||
<pre> | |||
fcc (100) surface | |||
3.53 | |||
.50000 .50000 .00000 | |||
-.50000 .50000 .00000 | |||
.00000 .00000 5.00000 | |||
5 | |||
Selective Dynamics | |||
Kartesisch | |||
.00000 .00000 .00000 F F F | |||
.00000 .50000 .50000 F F F | |||
.00000 .00000 1.00000 F F F | |||
.00000 .50000 1.50000 T T T | |||
.00000 .00000 2.00000 T T T | |||
</pre> | |||
*Ni lattice constant of 3.53<math>\AA</math>. | |||
*1 atom per layer: p(1x1) cell. | |||
*5 nickel layers. | |||
*First two layers (of one side) relaxed. | |||
*<math>3\times3.53 = 10.59 \AA</math> vacuum. | |||
=== {{TAG|INCAR}} === | |||
{{TAGBL|ISTART}} = 0; {{TAGBL|ICHARG}} = 2 | {{TAGBL|ISTART}} = 0; {{TAGBL|ICHARG}} = 2 | ||
Line 23: | Line 49: | ||
{{TAGBL|IBRION}} = 1 | {{TAGBL|IBRION}} = 1 | ||
*{{TAG|KPOINTS}} | *Initial charge-density in startjob from overlapping atoms. | ||
*Default energy cut-off of 270 eV. | |||
*MP-smearing (metal). | |||
*Spin-polarized calculation with initial moment of 1. | |||
*Ionic relaxation used. | |||
=== {{TAG|KPOINTS}} === | |||
<pre> | <pre> | ||
k-points | k-points | ||
Line 32: | Line 64: | ||
</pre> | </pre> | ||
*{{TAG| | *Equally spaced mesh. | ||
*Odd mesh, centered on <math>\Gamma</math>. | |||
*15 k points in irreducible Brillouin zone (IBZ). | |||
3. | *Only one k point in z-direction for surface. | ||
== Calculation == | |||
*The sample output for the forces in the {{TAG|OUTCAR}} file should look like this (first and last step): | |||
Selective Dynamics | First step: | ||
POSITION TOTAL-FORCE (eV/Angst) | |||
----------------------------------------------------------------------------------- | |||
0.00000 0.00000 0.00000 0.000000 0.000000 0.391352 | |||
0.00000 1.76500 1.76500 0.000000 0.000000 -0.397024 | |||
0.00000 0.00000 3.53000 0.000000 0.000000 0.005117 | |||
0.00000 1.76500 5.29500 0.000000 0.000000 0.391161 | |||
</ | 0.00000 0.00000 7.06000 0.000000 0.000000 -0.390607 | ||
----------------------------------------------------------------------------------- | |||
total drift: 0.000000 0.000000 0.016391 | |||
Last step: | |||
POSITION TOTAL-FORCE (eV/Angst) | |||
----------------------------------------------------------------------------------- | |||
0.00000 0.00000 0.00000 0.000000 0.000000 0.399012 | |||
0.00000 1.76500 1.76500 0.000000 0.000000 -0.377003 | |||
0.00000 0.00000 3.53000 0.000000 0.000000 0.105799 | |||
0.00000 1.76500 5.32685 0.000000 0.000000 -0.062054 | |||
0.00000 0.00000 7.02377 0.000000 0.000000 -0.065753 | |||
----------------------------------------------------------------------------------- | |||
total drift: 0.000000 0.000000 -0.042925 | |||
*Energy changes during relaxation from -25.556 to -25.571 eV which gives a relaxation energy of <math>E^{\mathrm{rel}} = -15</math> meV. Use p4vasp to check the convergence: | |||
[[File:Fig Ni 100 surfrel 1.png|600px]] | |||
*The surface energy of 0.86 eV for the unrelaxed surface is calculated in the following: | |||
<math>\sigma^{\mathrm{unrel}} = \frac{1}{2} (E_{\mathrm{surf}}-N_{\mathrm{atoms}} \cdot E_{\mathrm{bulk}}) = \frac{1}{2} (-25.556-5\cdot(-5.457))= 0.86</math> eV. | |||
*The surface energy of 0.84 eV for the relaxed surface is then calculated as: | |||
<math> \sigma = \sigma^{\mathrm{unrel}} + E^{\mathrm{rel}} = 0.84</math> eV. | |||
*The final geometry (from the {{TAG|CONTCAR}} or {{TAG|OUTCAR}} file) should look as follows: | |||
fcc (100) surface | |||
3.53000000000000 | |||
0.5000000000000000 0.5000000000000000 0.000000000000000 | |||
-0.5000000000000000 0.5000000000000000 0.000000000000000 | |||
0.0000000000000000 0.0000000000000000 5.000000000000000 | |||
Ni | |||
5 | |||
Selective Dynamics | |||
Direct | |||
0.0000000000000000 0.0000000000000000 0.0000000000000000 F F F | |||
0.0000000000000000 0.5000000000000000 0.1000000000000014 F F F | |||
0.0000000000000000 0.0000000000000000 0.2000000000000028 F F F | |||
0.5000000000000000 0.5000000000000000 0.3018043743226639 T T T | |||
0.0000000000000000 0.0000000000000000 0.3979474020596729 T T T | |||
*Inward relaxation of surface layers: | |||
** <math>\Delta d_{12}</math> = ((0.3979-0.3018)-0.1)/0.1*100=-3.9%. | |||
** <math>\Delta d_{12}</math> = ((0.3018-0.2000)-0.1)/0.1*100=+1.8%. | |||
*Use p4vasp to visualize the relaxation: | |||
[[File:Fig Ni 100 surfrel 2.png|800px]] | |||
== Download == | == Download == | ||
[ | [[Media:Ni100clean_rel.tgz| Ni100clean_rel.tgz]] | ||
{{Sur_sci}} | |||
[[Category:Examples]] | [[Category:Examples]] |
Latest revision as of 13:55, 14 November 2019
Overview > Ni 100 surface relaxation > Ni 100 surface DOS > Ni 100 surface bandstructure > Ni 111 surface relaxation > CO on Ni 111 surface > Ni 111 surface high precision > partial DOS of CO on Ni 111 surface > vibrational frequencies of CO on Ni 111 surface > STM of graphite > STM of graphene > collective jumps of a Pt adatom on fcc-Pt (001): Nudged Elastic Band Calculation > List of tutorials
Task
Relaxation of the first two layers of a Ni (100) surface.
Input
POSCAR
fcc (100) surface 3.53 .50000 .50000 .00000 -.50000 .50000 .00000 .00000 .00000 5.00000 5 Selective Dynamics Kartesisch .00000 .00000 .00000 F F F .00000 .50000 .50000 F F F .00000 .00000 1.00000 F F F .00000 .50000 1.50000 T T T .00000 .00000 2.00000 T T T
- Ni lattice constant of 3.53.
- 1 atom per layer: p(1x1) cell.
- 5 nickel layers.
- First two layers (of one side) relaxed.
- vacuum.
INCAR
ISTART = 0; ICHARG = 2 general: SYSTEM = clean Ni(100) surface ENCUT = 270 ISMEAR = 2 ; SIGMA = 0.2 ALGO = Fast EDIFF = 1E-6 spin: ISPIN=2 MAGMOM = 5*1 dynamic: NSW = 100 POTIM = 0.8 IBRION = 1
- Initial charge-density in startjob from overlapping atoms.
- Default energy cut-off of 270 eV.
- MP-smearing (metal).
- Spin-polarized calculation with initial moment of 1.
- Ionic relaxation used.
KPOINTS
k-points 0 Monkhorst-Pack 9 9 1 0 0 0
- Equally spaced mesh.
- Odd mesh, centered on .
- 15 k points in irreducible Brillouin zone (IBZ).
- Only one k point in z-direction for surface.
Calculation
- The sample output for the forces in the OUTCAR file should look like this (first and last step):
First step:
POSITION TOTAL-FORCE (eV/Angst) ----------------------------------------------------------------------------------- 0.00000 0.00000 0.00000 0.000000 0.000000 0.391352 0.00000 1.76500 1.76500 0.000000 0.000000 -0.397024 0.00000 0.00000 3.53000 0.000000 0.000000 0.005117 0.00000 1.76500 5.29500 0.000000 0.000000 0.391161 0.00000 0.00000 7.06000 0.000000 0.000000 -0.390607 ----------------------------------------------------------------------------------- total drift: 0.000000 0.000000 0.016391
Last step:
POSITION TOTAL-FORCE (eV/Angst) ----------------------------------------------------------------------------------- 0.00000 0.00000 0.00000 0.000000 0.000000 0.399012 0.00000 1.76500 1.76500 0.000000 0.000000 -0.377003 0.00000 0.00000 3.53000 0.000000 0.000000 0.105799 0.00000 1.76500 5.32685 0.000000 0.000000 -0.062054 0.00000 0.00000 7.02377 0.000000 0.000000 -0.065753 ----------------------------------------------------------------------------------- total drift: 0.000000 0.000000 -0.042925
- Energy changes during relaxation from -25.556 to -25.571 eV which gives a relaxation energy of meV. Use p4vasp to check the convergence:
- The surface energy of 0.86 eV for the unrelaxed surface is calculated in the following:
eV.
- The surface energy of 0.84 eV for the relaxed surface is then calculated as:
eV.
fcc (100) surface 3.53000000000000 0.5000000000000000 0.5000000000000000 0.000000000000000 -0.5000000000000000 0.5000000000000000 0.000000000000000 0.0000000000000000 0.0000000000000000 5.000000000000000 Ni 5 Selective Dynamics Direct 0.0000000000000000 0.0000000000000000 0.0000000000000000 F F F 0.0000000000000000 0.5000000000000000 0.1000000000000014 F F F 0.0000000000000000 0.0000000000000000 0.2000000000000028 F F F 0.5000000000000000 0.5000000000000000 0.3018043743226639 T T T 0.0000000000000000 0.0000000000000000 0.3979474020596729 T T T
- Inward relaxation of surface layers:
- = ((0.3979-0.3018)-0.1)/0.1*100=-3.9%.
- = ((0.3018-0.2000)-0.1)/0.1*100=+1.8%.
- Use p4vasp to visualize the relaxation:
Download
Overview > Ni 100 surface relaxation > Ni 100 surface DOS > Ni 100 surface bandstructure > Ni 111 surface relaxation > CO on Ni 111 surface > Ni 111 surface high precision > partial DOS of CO on Ni 111 surface > vibrational frequencies of CO on Ni 111 surface > STM of graphite > STM of graphene > collective jumps of a Pt adatom on fcc-Pt (001): Nudged Elastic Band Calculation > List of tutorials